Documents
Classical Simulation of (Bio)Molecular Systems (CSBMS)
Prof. Philippe H. Hünenberger + Prof. S. Riniker + Dr Jozica Dolenc / HS23
(protected documents require a n-ethz password)
| document | version | upload | link |
|---|---|---|---|
| Lecture 1 | HS23 | 19.09.2023 | CSBMS_lec_1_HS23.pdf |
| Lecture 2 | HS23 | 24.09.2023 | CSBMS_lec_2_HS23.pdf |
| Lecture 3 | HS23 | 26.09.2023 | CSBMS_lec_3_HS23.pdf |
| Lecture 4 | HS23 | 05.10.2023 | CSBMS_lec_4_HS23.pdf |
| Lecture 5 | HS23 | 11.10.2023 | CSBMS_lec_5_HS23.pdf |
| Lecture 6 | HS23 | 19.10.2023 | CSBMS_lec_6_HS23.pdf |
| Key Equations 1-6 | HS23 | 19.10.2023 | CSBMS_eqs_1-6_HS23.pdf |
| Lecture 7 | HS23 | 30.10.2023 | CSBMS_lec_7_HS23.pdf |
| Lecture 8 | HS23 | 06.11.2023 | CSBMS_lec_8_HS23.pdf |
| More on Distance Geometry | HS23 | 08.11.2023 | distance_geometry.pdf |
| Lecture 9 | HS23 | 13.11.2023 | CSBMS_lec_9_HS23.pdf |
| Lecture 10 | HS23 | 20.11.2023 | CSBMS_lec_10_HS23.pdf |
| Lecture 11 | HS23 | 27.11.2023 | CSBMS_lec_11_HS23.pdf |
| Lecture 12 | HS23 | 04.12.2023 | CSBMS_lec_12_HS23.pdf |
| Slides Minisymposium | HS23 | 12.12.2023 | CSBMS_minisymp_HS23_talks.pdf |
| Lecture 14 | HS23 | 19.12.2023 | CSBMS_lec_14_HS23.pdf |
Lecture slides (added the evening before each lecture; possibly also updated after the lecture)
| document | version | upload | link |
|---|---|---|---|
| Exercise 0 | HS23 | 18.09.2023 | CSBMS_exe_0_HS23.pdf |
| Exercise 0 (quickref) | HS23 | 18.09.2023 | CSBMS_exe_0_qck_HS23.pdf |
| Exercise 1 | HS23 | 18.09.2023 | CSBMS_exe_1_HS23.pdf |
| Exercise 2 | HS23 | 02.10.2023 | CSBMS_exe_2_HS23.pdf |
| Exercise 3 | HS23 | 11.10.2023 | CSBMS_exe_3_HS23.pdf |
| Exercise 4 | HS23 | 28.10.2023 | CSBMS_exe_4_HS23.pdf |
| Exercise 5 | HS23 | 13.11.2023 | CSBMS_exe_5_HS23.pdf |
| Exercise 6 | HS23 | 23.11.2023 | CSBMS_exe_6_HS23.pdf |
Exercise scripts (added latest after the lecture preceding the start of a new exercise)
| document | version | upload | link |
|---|---|---|---|
| Lecture script (student version for HS19) | HS19 | 27.08.2019 | CSBMS_scr_ini_HS19.pdf |
| Exercise script (student version for HS19) | HS19 | 27.08.2019 | CSBMS_exe_ini_HS19.pdf |
| Intro to UNIX (slides from Info I) | HS23 | 19.09.2023 | CSCBP_unx_sld_HS23.pdf |
| Intro to UNIX (exercise from Info I) | HS22 | 19.09.2023 | CSCBP_unx_exe_HS23.pdf |
| Intro to UNIX (connect from home from Info I) | HS23 | 19.09.2023 | CSCBP_unx_cnc_HS23.pdf |
| Simulation guide | HS13 | 30.08.2013 | CSCBP_sim_gde_HS13.pdf |
| Simulation validation | HS13 | 30.08.2013 | CSCBP_sim_vld_HS13.pdf |
| Wilfred van Gunsteren and GROMOS | HS13 | 26.09.2013 | CSCBP_wfg_edi_HS13.pdf |
| Exsikkator article May 2014 | 2014 | 13.08.2014 | CSCBP_exs_art_may_2014.pdf |
| Bibliometry essay Dec 2016 | 2016 | 12.12.2016 | CSCBP_bib_ess_dec_2016.pdf |
| (Full infozine S1 issue) | 2016 | 12.12.2016 | CSCBP_bib_infozine_dec_2016.pdf |
| Computer vs brain essay Dec 2018 | 2018 | 04.12.2018 | CSCBP_cvb_ess_nov_2018.pdf |
| (Full infozine S2 issue) | 2018 | 04.12.2018 | CSCBP_cvb_infozine_nov_2018.pdf |
| GROMOS manual (complete) | HS22 | 27.09.2022 | CSBMS_gro_man_all_HS22.pdf |
| GROMOS manual (vol 1; overview) | HS22 | 27.09.2022 | CSBMS_gro_man_v1_HS22.pdf |
| GROMOS manual (vol 2; algorithms) | HS22 | 27.09.2022 | CSBMS_gro_man_v2_HS22.pdf |
| GROMOS manual (vol 3; force field) | HS22 | 27.09.2022 | CSBMS_gro_man_v3_HS22.pdf |
| GROMOS manual (vol 4; files & formats) | HS22 | 27.09.2022 | CSBMS_gro_man_v4_HS22.pdf |
| GROMOS manual (vol 5; program library) | HS22 | 27.09.2022 | CSBMS_gro_man_v5_HS22.pdf |
| GROMOS manual (vol 6; technical details) | HS22 | 27.09.2022 | CSBMS_gro_man_v6_HS22.pdf |
| GROMOS manual (vol 7; tutorial) | HS22 | 27.09.2022 | CSBMS_gro_man_v7_HS22.pdf |
| GROMOS manual (vol 8; installation guide) | HS22 | 27.09.2022 | CSBMS_gro_man_v8_HS22.pdf |
| GROMOS manual (vol 9; index) | HS22 | 27.09.2022 | CSBMS_gro_man_v9_HS22.pdf |
Miscellaneous documents